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tools

Archive-Zip

🔗 https://metacpan.org/pod/Archive::Zip

Package description

Provide an interface to ZIP archive files.

Use latest version

module load Archive-Zip

Use specific version

module load Archive-Zip/1.68-GCCcore-11.2.0

AutoDock

🔗 http://autodock.scripps.edu/

Package description

AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.

Use latest version

module load AutoDock

Use specific version

module load AutoDock/4.2.6-GCC-10.3.0

AutoDock-GPU

🔗 https://github.com/ccsb-scripps/AutoDock-GPU

Package description

OpenCL and Cuda accelerated version of AutoDock. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units. AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.

Use latest version

module load AutoDock-GPU

Use specific version

module load AutoDock-GPU/1.5.3-GCC-10.3.0-CUDA-11.3.1
module load AutoDock-GPU/1.5.3-GCC-11.3.0-CUDA-11.7.0

DAlpahBall

🔗 https://www.rosettacommons.org/

Package description

AlphaBall contains a suite of program for computing the surface area and volume of unions of balls. It works on millions of balls. Part of Rosetta in main/source/extras

Use latest version

module load DAlpahBall

Use specific version

module load DAlpahBall/1.0-gompi-2020b

DB

🔗 https://www.oracle.com/technetwork/products/berkeleydb

Package description

Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.

Use latest version

module load DB

Use specific version

module load DB/18.1.32-GCCcore-8.3.0
module load DB/18.1.40-GCCcore-10.2.0
module load DB/18.1.40-GCCcore-10.3.0
module load DB/18.1.40-GCCcore-11.2.0
module load DB/18.1.40-GCCcore-11.3.0
module load DB/18.1.40-GCCcore-12.2.0

EasyBuild

🔗 https://easybuilders.github.io/easybuild

Package description

EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.

Use latest version

module load EasyBuild

Use specific version

module load EasyBuild/4.5.4
module load EasyBuild/4.5.5
module load EasyBuild/4.6.0
module load EasyBuild/4.6.1
module load EasyBuild/4.6.2
module load EasyBuild/4.7.0
module load EasyBuild/4.7.1
module load EasyBuild/4.8.1
module load EasyBuild/4.9.2
module load EasyBuild/4.9.4

FIRESTARTER

🔗 https://github.com/tud-zih-energy/FIRESTARTER/

Package description

FIRESTARTER: A Processor Stress Test Utility. FIRESTARTER maximizes the energy consumption of 64-Bit x86 processors by generating heavy load on the execution units as well as transferring data between the cores and multiple levels of the memory hierarchy.

Use latest version

module load FIRESTARTER

Use specific version

module load FIRESTARTER/2.1-GCCcore-13.3.0-CUDA-12.6.0

GLPK

🔗 https://www.gnu.org/software/glpk/

Package description

The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.

Use latest version

module load GLPK

Use specific version

module load GLPK/4.65-GCCcore-10.2.0
module load GLPK/5.0-GCCcore-11.2.0
module load GLPK/5.0-GCCcore-11.3.0
module load GLPK/5.0-GCCcore-12.2.0
module load GLPK/5.0-GCCcore-13.2.0

Ghostscript

🔗 https://ghostscript.com

Package description

Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.

Use latest version

module load Ghostscript

Use specific version

module load Ghostscript/9.50-GCCcore-8.3.0
module load Ghostscript/9.53.3-GCCcore-10.2.0
module load Ghostscript/9.54.0-GCCcore-10.3.0
module load Ghostscript/9.54.0-GCCcore-11.2.0
module load Ghostscript/9.56.1-GCCcore-11.3.0
module load Ghostscript/10.0.0-GCCcore-12.2.0
module load Ghostscript/10.02.1-GCCcore-13.2.0

HPL

🔗 https://www.netlib.org/benchmark/hpl/

Package description

HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.

Use latest version

module load HPL

Use specific version

module load HPL/2.3-foss-2021b

IOR

🔗 https://github.com/hpc/ior

Package description

The IOR software is used for benchmarking parallel file systems using POSIX, MPIIO, or HDF5 interfaces.

Use latest version

module load IOR

Use specific version

module load IOR/3.3.0-gompi-2020b
module load IOR/3.3.0-gompi-2022b

IPython

🔗 https://ipython.org/index.html

Package description

IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.

Use latest version

module load IPython

Use specific version

module load IPython/7.18.1-GCCcore-10.2.0
module load IPython/7.26.0-GCCcore-11.2.0
module load IPython/8.5.0-GCCcore-11.3.0

IRkernel

🔗 https://irkernel.github.io

Package description

The R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network.

Use latest version

module load IRkernel

Use specific version

module load IRkernel/1.3.2-foss-2022a-R-4.2.1

JupyterLab

🔗 https://jupyter.org/

Package description

JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.

Use latest version

module load JupyterLab

Use specific version

module load JupyterLab/2.2.8-GCCcore-10.2.0
module load JupyterLab/3.1.6-GCCcore-11.2.0

Meson

🔗 https://mesonbuild.com

Package description

Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.

Use latest version

module load Meson

Use specific version

module load Meson/0.55.3-GCCcore-10.2.0
module load Meson/0.58.0-GCCcore-10.3.0
module load Meson/0.58.2-GCCcore-11.2.0
module load Meson/0.59.1-GCCcore-8.3.0-Python-3.7.4
module load Meson/0.62.1-GCCcore-11.3.0
module load Meson/0.64.0-GCCcore-12.2.0
module load Meson/1.1.1-GCCcore-12.3.0
module load Meson/1.2.3-GCCcore-13.2.0
module load Meson/1.4.0-GCCcore-13.3.0

Nextflow

🔗 https://www.nextflow.io/

Package description

Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data

Use latest version

module load Nextflow

Use specific version

module load Nextflow/22.04.0
module load Nextflow/23.04.1
module load Nextflow/23.10.0

Ninja

🔗 https://ninja-build.org/

Package description

Ninja is a small build system with a focus on speed.

Use latest version

module load Ninja

Use specific version

module load Ninja/1.9.0-GCCcore-8.3.0
module load Ninja/1.10.1-GCCcore-10.2.0
module load Ninja/1.10.2-GCCcore-10.3.0
module load Ninja/1.10.2-GCCcore-11.2.0
module load Ninja/1.10.2-GCCcore-11.3.0
module load Ninja/1.11.1-GCCcore-12.2.0
module load Ninja/1.11.1-GCCcore-12.3.0
module load Ninja/1.11.1-GCCcore-13.2.0
module load Ninja/1.12.1-GCCcore-13.3.0

Pandoc

🔗 https://pandoc.org

Package description

If you need to convert files from one markup format into another, pandoc is your swiss-army knife

Use latest version

module load Pandoc

Use specific version

module load Pandoc/2.13
module load Pandoc/2.14.2

Pint

🔗 https://pypi.python.org/pypi/pint

Package description

Physical quantities module

Use latest version

module load Pint

Use specific version

module load Pint/0.17-foss-2020b

Szip

🔗 https://support.hdfgroup.org/doc_resource/SZIP/

Package description

Szip compression software, providing lossless compression of scientific data

Use latest version

module load Szip

Use specific version

module load Szip/2.1.1-GCCcore-8.3.0
module load Szip/2.1.1-GCCcore-10.2.0
module load Szip/2.1.1-GCCcore-10.3.0
module load Szip/2.1.1-GCCcore-11.2.0
module load Szip/2.1.1-GCCcore-11.3.0
module load Szip/2.1.1-GCCcore-12.2.0
module load Szip/2.1.1-GCCcore-12.3.0
module load Szip/2.1.1-GCCcore-13.2.0

UnZip

🔗 http://www.info-zip.org/UnZip.html

Package description

UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.

Use latest version

module load UnZip

Use specific version

module load UnZip/6.0-GCCcore-10.2.0
module load UnZip/6.0-GCCcore-10.3.0
module load UnZip/6.0-GCCcore-11.2.0
module load UnZip/6.0-GCCcore-11.3.0
module load UnZip/6.0-GCCcore-12.2.0
module load UnZip/6.0-GCCcore-12.3.0
module load UnZip/6.0-GCCcore-13.2.0
module load UnZip/6.0-GCCcore-13.3.0

Vim

🔗 http://www.vim.org

Package description

Vim is an advanced text editor that seeks to provide the power of the de-facto Unix editor 'Vi', with a more complete feature set.

Use latest version

module load Vim

Use specific version

module load Vim/9.0.1434-GCCcore-12.2.0

Wireshark

🔗 https://www.wireshark.org

Package description

Wireshark is the world's foremost and widely-used network protocol analyzer. It lets you see what's happening on your network at a microscopic level and is the de facto (and often de jure) standard across many commercial and non-profit enterprises, government agencies, and educational institutions.

Use latest version

module load Wireshark

Use specific version

module load Wireshark/4.0.1-GCCcore-11.2.0

XZ

🔗 https://tukaani.org/xz/

Package description

xz: XZ utilities

Use latest version

module load XZ

Use specific version

module load XZ/5.2.4-GCCcore-8.3.0
module load XZ/5.2.5-GCCcore-10.2.0
module load XZ/5.2.5-GCCcore-10.3.0
module load XZ/5.2.5-GCCcore-11.2.0
module load XZ/5.2.5-GCCcore-11.3.0
module load XZ/5.2.7-GCCcore-12.2.0
module load XZ/5.4.2-GCCcore-12.3.0
module load XZ/5.4.4-GCCcore-13.2.0
module load XZ/5.4.5-GCCcore-13.3.0

Z3

🔗 https://github.com/Z3Prover/z3

Package description

Z3 is a theorem prover from Microsoft Research.

Use latest version

module load Z3

Use specific version

module load Z3/4.8.10-GCCcore-10.2.0
module load Z3/4.10.2-GCCcore-11.3.0
module load Z3/4.12.1-GCCcore-12.2.0

Zip

🔗 http://www.info-zip.org/Zip.html

Package description

Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality

Use latest version

module load Zip

Use specific version

module load Zip/3.0-GCCcore-8.3.0
module load Zip/3.0-GCCcore-10.2.0
module load Zip/3.0-GCCcore-10.3.0
module load Zip/3.0-GCCcore-11.2.0
module load Zip/3.0-GCCcore-11.3.0

archspec

🔗 https://github.com/archspec/archspec

Package description

A library for detecting, labeling, and reasoning about microarchitectures

Use latest version

module load archspec

Use specific version

module load archspec/0.1.2-GCCcore-10.2.0

arrow-R

🔗 https://cran.r-project.org/web/packages/arrow

Package description

R interface to the Apache Arrow C++ library

Use latest version

module load arrow-R

Use specific version

module load arrow-R/6.0.0.2-foss-2021b-R-4.1.2
module load arrow-R/8.0.0-foss-2022a-R-4.2.1
module load arrow-R/11.0.0.3-foss-2022b-R-4.2.2

awscli

🔗 https://pypi.python.org/pypi/awscli

Package description

Universal Command Line Environment for AWS

Use latest version

module load awscli

Use specific version

module load awscli/1.25.43-GCCcore-11.2.0

binutils

🔗 https://directory.fsf.org/project/binutils/

Package description

binutils: GNU binary utilities

Use latest version

module load binutils

Use specific version

module load binutils/2.28
module load binutils/2.32-GCCcore-8.3.0
module load binutils/2.32
module load binutils/2.35-GCCcore-10.2.0
module load binutils/2.35
module load binutils/2.36.1-GCCcore-10.3.0
module load binutils/2.36.1
module load binutils/2.37-GCCcore-11.2.0
module load binutils/2.37
module load binutils/2.38-GCCcore-11.3.0
module load binutils/2.38
module load binutils/2.39-GCCcore-12.2.0
module load binutils/2.39
module load binutils/2.40-GCCcore-12.3.0
module load binutils/2.40-GCCcore-13.2.0
module load binutils/2.40
module load binutils/2.42-GCCcore-13.3.0
module load binutils/2.42

bokeh

🔗 https://github.com/bokeh/bokeh

Package description

Statistical and novel interactive HTML plots for Python

Use latest version

module load bokeh

Use specific version

module load bokeh/2.2.3-foss-2020b
module load bokeh/2.2.3-fosscuda-2020b
module load bokeh/2.4.2-foss-2021b

bzip2

🔗 https://sourceware.org/bzip2

Package description

bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

Use latest version

module load bzip2

Use specific version

module load bzip2/1.0.8-GCCcore-8.3.0
module load bzip2/1.0.8-GCCcore-10.2.0
module load bzip2/1.0.8-GCCcore-10.3.0
module load bzip2/1.0.8-GCCcore-11.2.0
module load bzip2/1.0.8-GCCcore-11.3.0
module load bzip2/1.0.8-GCCcore-12.2.0
module load bzip2/1.0.8-GCCcore-12.3.0
module load bzip2/1.0.8-GCCcore-13.2.0
module load bzip2/1.0.8-GCCcore-13.3.0

cURL

🔗 https://curl.haxx.se

Package description

libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.

Use latest version

module load cURL

Use specific version

module load cURL/7.66.0-GCCcore-8.3.0
module load cURL/7.72.0-GCCcore-10.2.0
module load cURL/7.76.0-GCCcore-10.3.0
module load cURL/7.78.0-GCCcore-11.2.0
module load cURL/7.83.0-GCCcore-11.3.0
module load cURL/7.86.0-GCCcore-12.2.0
module load cURL/8.0.1-GCCcore-12.3.0
module load cURL/8.3.0-GCCcore-13.2.0
module load cURL/8.4.0-GCCcore-12.3.0
module load cURL/8.7.1-GCCcore-13.3.0

ccache

🔗 https://ccache.dev/

Package description

Ccache (or “ccache”) is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again

Use latest version

module load ccache

Use specific version

module load ccache/4.6.1-GCCcore-11.2.0
module load ccache/4.6.3-GCCcore-11.3.0

cffi

🔗 https://cffi.readthedocs.io/en/latest/

Package description

C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.

Use latest version

module load cffi

Use specific version

module load cffi/1.15.1-GCCcore-12.3.0
module load cffi/1.15.1-GCCcore-13.2.0

cppy

🔗 https://github.com/nucleic/cppy

Package description

A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.

Use latest version

module load cppy

Use specific version

module load cppy/1.1.0-GCCcore-10.3.0
module load cppy/1.1.0-GCCcore-11.2.0
module load cppy/1.2.1-GCCcore-11.3.0
module load cppy/1.2.1-GCCcore-12.2.0

cryptography

🔗 https://github.com/pyca/cryptography

Package description

cryptography is a package designed to expose cryptographic primitives and recipes to Python developers.

Use latest version

module load cryptography

Use specific version

module load cryptography/41.0.1-GCCcore-12.3.0
module load cryptography/41.0.5-GCCcore-13.2.0

deepdiff

🔗 https://deepdiff.readthedocs.io/en/latest/

Package description

DeepDiff: Deep Difference of dictionaries, iterables and almost any other object recursively.

Use latest version

module load deepdiff

Use specific version

module load deepdiff/3.3.0-foss-2020b

enchant-2

🔗 https://github.com/AbiWord/enchant

Package description

Enchant aims to provide a simple but comprehensive abstraction for dealing with different spell checking libraries in a consistent way. A client, such as a text editor or word processor, need not know anything about a specific spell-checker, and since all back-ends are plugins, new spell-checkers can be added without needing any change to the program using Enchant.

Use latest version

module load enchant-2

Use specific version

module load enchant-2/2.3.3-GCCcore-11.2.0
module load enchant-2/2.3.3-GCCcore-11.3.0

expat

🔗 https://libexpat.github.io

Package description

Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).

Use latest version

module load expat

Use specific version

module load expat/2.2.7-GCCcore-8.3.0
module load expat/2.2.9-GCCcore-10.2.0
module load expat/2.2.9-GCCcore-10.3.0
module load expat/2.4.1-GCCcore-11.2.0
module load expat/2.4.8-GCCcore-11.3.0
module load expat/2.4.9-GCCcore-12.2.0
module load expat/2.5.0-GCCcore-12.3.0
module load expat/2.5.0-GCCcore-13.2.0

expecttest

🔗 https://github.com/ezyang/expecttest

Package description

This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.

Use latest version

module load expecttest

Use specific version

module load expecttest/0.1.3-GCCcore-10.3.0
module load expecttest/0.1.3-GCCcore-11.2.0
module load expecttest/0.1.3-GCCcore-11.3.0

fio

🔗 https://github.com/axboe/fio

Package description

Flexible I/O tester

Use latest version

module load fio

Use specific version

module load fio/3.34-GCCcore-12.2.0

flit

🔗 https://github.com/pypa/flit

Package description

A simple packaging tool for simple packages.

Use latest version

module load flit

Use specific version

module load flit/3.9.0-GCCcore-12.3.0
module load flit/3.9.0-GCCcore-13.2.0

gawk

🔗 https://www.gnu.org/software/gawk

Package description

The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code.

Use latest version

module load gawk

Use specific version

module load gawk/5.1.0-GCC-10.2.0

gettext

🔗 https://www.gnu.org/software/gettext/

Package description

GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation

Use latest version

module load gettext

Use specific version

module load gettext/0.19.8.1
module load gettext/0.20.1-GCCcore-8.3.0
module load gettext/0.21-GCCcore-10.2.0
module load gettext/0.21-GCCcore-10.3.0
module load gettext/0.21-GCCcore-11.2.0
module load gettext/0.21-GCCcore-11.3.0
module load gettext/0.21
module load gettext/0.21.1-GCCcore-12.2.0
module load gettext/0.21.1-GCCcore-12.3.0
module load gettext/0.21.1
module load gettext/0.22-GCCcore-13.2.0
module load gettext/0.22
module load gettext/0.22.5

git

🔗 https://git-scm.com

Package description

Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.

Use latest version

module load git

Use specific version

module load git/2.28.0-GCCcore-10.2.0-nodocs
module load git/2.32.0-GCCcore-10.3.0-nodocs
module load git/2.33.1-GCCcore-11.2.0-nodocs
module load git/2.33.2-GCCcore-11.2.0-nodocs
module load git/2.36.0-GCCcore-11.3.0-nodocs
module load git/2.38.1-GCCcore-12.2.0-nodocs
module load git/2.39.1-GCCcore-11.2.0-nodocs
module load git/2.39.1-GCCcore-11.3.0-nodocs
module load git/2.39.1-GCCcore-12.2.0-nodocs
module load git/2.40.0-GCCcore-11.2.0-nodocs
module load git/2.40.0-GCCcore-11.3.0-nodocs
module load git/2.40.0-GCCcore-12.2.0-nodocs
module load git/2.41.0-GCCcore-12.3.0-nodocs
module load git/2.42.0-GCCcore-13.2.0

git-lfs

🔗 https://git-lfs.github.com

Package description

Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com

Use latest version

module load git-lfs

Use specific version

module load git-lfs/3.2.0

googletest

🔗 https://github.com/google/googletest

Package description

Google's framework for writing C++ tests on a variety of platforms

Use latest version

module load googletest

Use specific version

module load googletest/1.11.0-GCCcore-11.3.0
module load googletest/1.12.1-GCCcore-12.2.0
module load googletest/1.13.0-GCCcore-12.3.0
module load googletest/1.14.0-GCCcore-13.2.0

gperftools

🔗 https://github.com/gperftools/gperftools

Package description

gperftools is a collection of a high-performance multi-threaded malloc() implementation, plus some pretty nifty performance analysis tools. Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler.

Use latest version

module load gperftools

Use specific version

module load gperftools/2.10-GCCcore-11.3.0

groff

🔗 https://www.gnu.org/software/groff

Package description

Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.

Use latest version

module load groff

Use specific version

module load groff/1.22.4-GCCcore-8.3.0
module load groff/1.22.4-GCCcore-10.2.0
module load groff/1.22.4-GCCcore-10.3.0
module load groff/1.22.4-GCCcore-11.2.0
module load groff/1.22.4-GCCcore-11.3.0
module load groff/1.22.4-GCCcore-12.2.0
module load groff/1.22.4-GCCcore-12.3.0
module load groff/1.23.0-GCCcore-13.2.0

gzip

🔗 https://www.gnu.org/software/gzip/

Package description

gzip (GNU zip) is a popular data compression program as a replacement for compress

Use latest version

module load gzip

Use specific version

module load gzip/1.10-GCCcore-10.2.0
module load gzip/1.10-GCCcore-10.3.0
module load gzip/1.10-GCCcore-11.2.0
module load gzip/1.12-GCCcore-11.3.0
module load gzip/1.12-GCCcore-12.2.0
module load gzip/1.12-GCCcore-12.3.0
module load gzip/1.13-GCCcore-13.2.0

hatchling

🔗 https://hatch.pypa.io

Package description

Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.

Use latest version

module load hatchling

Use specific version

module load hatchling/1.18.0-GCCcore-12.3.0
module load hatchling/1.18.0-GCCcore-13.2.0

help2man

🔗 https://www.gnu.org/software/help2man/

Package description

help2man produces simple manual pages from the '--help' and '--version' output of other commands.

Use latest version

module load help2man

Use specific version

module load help2man/1.47.8-GCCcore-8.3.0
module load help2man/1.47.16-GCCcore-10.2.0
module load help2man/1.48.3-GCCcore-10.3.0
module load help2man/1.48.3-GCCcore-11.2.0
module load help2man/1.49.2-GCCcore-11.3.0
module load help2man/1.49.2-GCCcore-12.2.0
module load help2man/1.49.3-GCCcore-12.3.0
module load help2man/1.49.3-GCCcore-13.2.0
module load help2man/1.49.3-GCCcore-13.3.0

hiredis

🔗 https://github.com/redis/hiredis

Package description

Hiredis is a minimalistic C client library for the Redis database. It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command.

Use latest version

module load hiredis

Use specific version

module load hiredis/1.0.2-GCCcore-11.2.0
module load hiredis/1.0.2-GCCcore-11.3.0

hunspell

🔗 https://hunspell.github.io/

Package description

Hunspell is a spell checker and morphological analyzer library and program designed for languageswith rich morphology and complex word compounding or character encoding.

Use latest version

module load hunspell

Use specific version

module load hunspell/1.7.1-GCCcore-11.2.0
module load hunspell/1.7.1-GCCcore-11.3.0

hypothesis

🔗 https://github.com/HypothesisWorks/hypothesis

Package description

Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.

Use latest version

module load hypothesis

Use specific version

module load hypothesis/4.44.2-GCCcore-8.3.0-Python-3.7.4
module load hypothesis/5.41.2-GCCcore-10.2.0
module load hypothesis/5.41.5-GCCcore-10.2.0
module load hypothesis/6.13.1-GCCcore-10.3.0
module load hypothesis/6.14.6-GCCcore-11.2.0
module load hypothesis/6.46.7-GCCcore-11.3.0
module load hypothesis/6.68.2-GCCcore-12.2.0
module load hypothesis/6.82.0-GCCcore-12.3.0
module load hypothesis/6.90.0-GCCcore-13.2.0

imbalanced-learn

🔗 https://github.com/scikit-learn-contrib/imbalanced-learn

Package description

imbalanced-learn is a Python package offering a number of re-sampling techniques commonly used in datasets showing strong between-class imbalance.

Use latest version

module load imbalanced-learn

Use specific version

module load imbalanced-learn/0.10.1-foss-2022a

jax

🔗 https://pypi.python.org/pypi/jax

Package description

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

Use latest version

module load jax

Use specific version

module load jax/0.3.9-foss-2021b-CUDA-11.4.1
module load jax/0.3.25-foss-2022a-CUDA-11.7.0
module load jax/0.4.4-foss-2022a-CUDA-11.7.0

libarchive

🔗 https://www.libarchive.org/

Package description

Multi-format archive and compression library

Use latest version

module load libarchive

Use specific version

module load libarchive/3.4.3-GCCcore-10.2.0
module load libarchive/3.5.1-GCCcore-10.3.0
module load libarchive/3.5.1-GCCcore-11.2.0
module load libarchive/3.6.1-GCCcore-11.3.0
module load libarchive/3.6.1-GCCcore-12.2.0
module load libarchive/3.6.2-GCCcore-12.3.0
module load libarchive/3.7.2-GCCcore-13.2.0
module load libarchive/3.7.4-GCCcore-13.3.0

libavif

🔗 https://github.com/AOMediaCodec/libavif

Package description

This library aims to be a friendly, portable C implementation of the AV1 Image File Format, as described here: https://aomediacodec.github.io/av1-avif/

Use latest version

module load libavif

Use specific version

module load libavif/0.11.1-GCCcore-11.3.0

meson-python

🔗 https://github.com/mesonbuild/meson-python

Package description

Python build backend (PEP 517) for Meson projects

Use latest version

module load meson-python

Use specific version

module load meson-python/0.15.0-GCCcore-13.2.0

networkx

🔗 https://pypi.python.org/pypi/networkx

Package description

NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.

Use latest version

module load networkx

Use specific version

module load networkx/2.4-fosscuda-2019b-Python-3.7.4
module load networkx/2.5-foss-2020b
module load networkx/2.5-fosscuda-2020b
module load networkx/2.6.3-foss-2021b
module load networkx/2.8.4-foss-2022a

nf-test

🔗 https://code.askimed.com/nf-test/

Package description

nf-test is a simple testing framework for Nextflow pipelines

Use latest version

module load nf-test

Use specific version

module load nf-test/0.7.3

numactl

🔗 https://github.com/numactl/numactl

Package description

The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.

Use latest version

module load numactl

Use specific version

module load numactl/2.0.12-GCCcore-8.3.0
module load numactl/2.0.13-GCCcore-10.2.0
module load numactl/2.0.14-GCCcore-10.3.0
module load numactl/2.0.14-GCCcore-11.2.0
module load numactl/2.0.14-GCCcore-11.3.0
module load numactl/2.0.16-GCCcore-12.2.0
module load numactl/2.0.16-GCCcore-12.3.0
module load numactl/2.0.16-GCCcore-13.2.0
module load numactl/2.0.18-GCCcore-13.3.0

parallel

🔗 https://savannah.gnu.org/projects/parallel/

Package description

parallel: Build and execute shell commands in parallel

Use latest version

module load parallel

Use specific version

module load parallel/20190922-GCCcore-8.3.0
module load parallel/20220722-GCCcore-11.3.0

patchelf

🔗 https://github.com/NixOS/patchelf

Package description

PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.

Use latest version

module load patchelf

Use specific version

module load patchelf/0.18.0-GCCcore-12.3.0
module load patchelf/0.18.0-GCCcore-13.2.0

pigz

🔗 https://zlib.net/pigz/

Package description

pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries.

Use latest version

module load pigz

Use specific version

module load pigz/2.6-GCCcore-11.2.0
module load pigz/2.7-GCCcore-11.3.0

poetry

🔗 https://python-poetry.org

Package description

Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.

Use latest version

module load poetry

Use specific version

module load poetry/1.5.1-GCCcore-12.3.0
module load poetry/1.6.1-GCCcore-13.2.0

py-cpuinfo

🔗 https://github.com/workhorsy/py-cpuinfo

Package description

py-cpuinfo gets CPU info with pure Python.

Use latest version

module load py-cpuinfo

Use specific version

module load py-cpuinfo/9.0.0-GCCcore-11.3.0

pydantic

🔗 https://pypi.python.org/pypi/pydantic

Package description

Data validation and settings management using python 3.6 type hinting

Use latest version

module load pydantic

Use specific version

module load pydantic/1.8.1-foss-2020b

pytest

🔗 https://pytest.org

Package description

pytest: simple powerful testing with Python

Use latest version

module load pytest

Use specific version

module load pytest/3.8.2-foss-2020b
module load pytest/7.1.3-GCCcore-11.2.0

pytest-xdist

🔗 https://github.com/pytest-dev/pytest-xdist

Package description

xdist: pytest distributed testing plugin The pytest-xdist plugin extends pytest with some unique test execution modes: * test run parallelization: if you have multiple CPUs or hosts you can use those for a combined test run. This allows to speed up development or to use special resources of remote machines. * --looponfail: run your tests repeatedly in a subprocess. After each run pytest waits until a file in your project changes and then re-runs the previously failing tests. This is repeated until all tests pass after which again a full run is performed. * Multi-Platform coverage: you can specify different Python interpreters or different platforms and run tests in parallel on all of them. Before running tests remotely, pytest efficiently “rsyncs” your program source code to the remote place. All test results are reported back and displayed to your local terminal. You may specify different Python versions and interpreters.

Use latest version

module load pytest-xdist

Use specific version

module load pytest-xdist/2.5.0-GCCcore-11.2.0
module load pytest-xdist/2.5.0-GCCcore-11.3.0

quarto

🔗 https://quarto.org/

Package description

An open-source scientific and technical publishing system

Use latest version

module load quarto

Use specific version

module load quarto/1.3.294-GCCcore-12.2.0

re2c

🔗 https://re2c.org

Package description

re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.

Use latest version

module load re2c

Use specific version

module load re2c/2.0.3-GCCcore-10.2.0
module load re2c/2.1.1-GCCcore-10.3.0
module load re2c/2.2-GCCcore-11.2.0
module load re2c/2.2-GCCcore-11.3.0
module load re2c/3.0-GCCcore-12.2.0

setuptools-rust

🔗 https://github.com/PyO3/setuptools-rust

Package description

setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.

Use latest version

module load setuptools-rust

Use specific version

module load setuptools-rust/1.6.0-GCCcore-12.3.0
module load setuptools-rust/1.8.0-GCCcore-13.2.0

snakemake

🔗 https://snakemake.readthedocs.io

Package description

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.

Use latest version

module load snakemake

Use specific version

module load snakemake/6.10.0-foss-2021b

tcsh

🔗 https://www.tcsh.org

Package description

Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.

Use latest version

module load tcsh

Use specific version

module load tcsh/6.24.01-GCCcore-11.3.0
module load tcsh/6.24.10-GCCcore-12.3.0

unifdef

🔗 https://github.com/fanf2/unifdef

Package description

unifdef - selectively remove C preprocessor conditionals The unifdef utility selectively processes conditional C preprocessor and the additional text that they delimit, while otherwise leaving the file alone.

Use latest version

module load unifdef

Use specific version

module load unifdef/2.12-GCCcore-11.3.0

util-linux

🔗 https://www.kernel.org/pub/linux/utils/util-linux

Package description

Set of Linux utilities

Use latest version

module load util-linux

Use specific version

module load util-linux/2.34-GCCcore-8.3.0
module load util-linux/2.36-GCCcore-10.2.0
module load util-linux/2.36-GCCcore-10.3.0
module load util-linux/2.37-GCCcore-11.2.0
module load util-linux/2.38-GCCcore-11.3.0
module load util-linux/2.38.1-GCCcore-12.2.0
module load util-linux/2.39-GCCcore-12.3.0
module load util-linux/2.39-GCCcore-13.2.0

virtualenv

🔗 https://github.com/pypa/virtualenv

Package description

A tool for creating isolated virtual python environments.

Use latest version

module load virtualenv

Use specific version

module load virtualenv/20.23.1-GCCcore-12.3.0
module load virtualenv/20.24.6-GCCcore-13.2.0

wandb

🔗 https://www.wandb.com/

Package description

CLI and Python API for Weights and Biases: a tool for visualizing and tracking your machine learning experiments.

Use latest version

module load wandb

Use specific version

module load wandb/0.13.4-GCCcore-11.3.0

xxd

🔗 https://www.vim.org

Package description

xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.

Use latest version

module load xxd

Use specific version

module load xxd/8.2.4220-GCCcore-10.2.0
module load xxd/8.2.4220-GCCcore-11.2.0
module load xxd/8.2.4220-GCCcore-11.3.0