numlib
Armadillo
Package description
Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
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BLIS
https://github.com/flame/blis/
Package description
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
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CGAL
Package description
The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
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FFTW
Package description
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
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FFTW.MPI
Package description
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
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GSL
https://www.gnu.org/software/gsl/
Package description
The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
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NLopt
http://ab-initio.mit.edu/wiki/index.php/NLopt
Package description
NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
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OpenBLAS
Package description
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
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ScaLAPACK
https://www.netlib.org/scalapack/
Package description
The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
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SuiteSparse
https://faculty.cse.tamu.edu/davis/suitesparse.html
Package description
SuiteSparse is a collection of libraries manipulate sparse matrices.
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TM-align
https://zhanggroup.org/TM-align/
Package description
TM-align is an algorithm for sequence independent protein structure comparisons. For two protein structures of unknown equivalence, TM-align first generates optimized residue-to-residue alignment based on structural similarity using heuristic dynamic programming iterations.
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arpack-ng
https://github.com/opencollab/arpack-ng
Package description
ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
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beagle-lib
https://github.com/beagle-dev/beagle-lib
Package description
beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages.
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cuDNN
https://developer.nvidia.com/cudnn
Package description
The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks.